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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:927.2 nTPM
HPA:927.2 nTPM
FANTOM5:226.6 Scaled Tags Per Million
Pig:0.2 nTPM
Mouse:276.9 nTPM
Allen mouse:3.8 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 927.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 883.8
2396 Male, age 61, right hemisphere 896.3
2497 Male, age 66, unknown 885.9
2032 Female, age 42, unknown 869.1
Centromedial thalamic nucleus
nTPM: 873.7
2279 Female, age 85, left hemisphere 873.9
2401 Male, age 76, right hemisphere 873.5
Habenula
nTPM: 881.1
1957 Male, age 80, both hemispheres 889.5
2203 Male, age 61, left hemisphere 884.8
2252 Male, age 62, unknown 880.4
2276 Male, age 66, unknown 869.5
Lateral geniculate body
nTPM: 892.3
2857 Male, age 74, right hemisphere 906.3
2575 Female, age 94, right hemisphere 906.1
1953 Male, age 62, unknown 894.0
2106 Female, age 67, right hemisphere 892.8
2035 Female, age 72, unknown 889.0
2841 Male, age 80, both hemispheres 884.9
2659 Male, age 66, unknown 883.8
2399 Male, age 61, left hemisphere 881.8
Lateral thalamic nuclei
nTPM: 894.4
2573 Female, age 94, left hemisphere 908.7
2765 Female, age 67, both hemispheres 897.0
2577 Male, age 74, both hemispheres 895.8
2661 Female, age 72, unknown 891.9
1903 Male, age 76, left hemisphere 878.3
Medial dorsal thalamic nucleus
nTPM: 886.4
2572 Female, age 94, right hemisphere 934.7
1810 Male, age 48, unknown 891.2
1971 Male, age 61, right hemisphere 889.0
1859 Male, age 76, both hemispheres 887.2
1930 Female, age 42, unknown 885.4
2660 Female, age 72, unknown 885.2
2498 Male, age 66, unknown 884.1
2576 Male, age 74, both hemispheres 884.0
2039 Female, age 72, unknown 882.4
2402 Female, age 67, both hemispheres 879.1
2283 Male, age 80, right hemisphere 876.5
2492 Male, age 75, right hemisphere 872.6
2026 Male, age 62, unknown 872.3
Medial geniculate body
nTPM: 888.7
2650 Female, age 94, left hemisphere 907.2
2571 Male, age 75, right hemisphere 895.0
2657 Male, age 74, right hemisphere 892.3
1811 Female, age 42, unknown 887.3
2207 Male, age 80, right hemisphere 886.6
2049 Male, age 76, both hemispheres 877.6
2217 Female, age 72, unknown 875.0
Nucleus reuniens
nTPM: 893.5
2210 Female, age 85, left hemisphere 901.0
2212 Female, age 67, left hemisphere 894.4
2205 Male, age 80, left hemisphere 885.0
Nucleus rhomboideus
nTPM: 888.6
2213 Female, age 67, left hemisphere 895.0
2280 Female, age 85, left hemisphere 889.7
2206 Male, age 80, both hemispheres 881.0
Posterior thalamic nucleus
nTPM: 927.2
2649 Female, age 94, both hemispheres 1042.9
2655 Male, age 74, right hemisphere 907.0
2495 Female, age 67, right hemisphere 880.8
2266 Male, age 76, right hemisphere 878.0
Pulvinar
nTPM: 884.8
2496 Female, age 67, right hemisphere 901.0
2724 Male, age 74, right hemisphere 890.2
2499 Male, age 66, unknown 890.1
1972 Male, age 62, unknown 889.6
1932 Male, age 80, right hemisphere 888.1
1929 Male, age 48, unknown 884.0
2214 Male, age 76, right hemisphere 882.3
2398 Male, age 61, left hemisphere 881.0
1899 Female, age 42, unknown 872.7
2582 Female, age 72, unknown 868.8
Subthalamic nucleus
nTPM: 889.7
2658 Male, age 74, both hemispheres 913.2
2124 Male, age 62, unknown 908.5
2275 Male, age 66, unknown 890.7
2056 Female, age 72, unknown 888.5
2282 Male, age 61, both hemispheres 885.2
2779 Female, age 42, unknown 884.2
2216 Male, age 48, unknown 880.3
2406 Female, age 72, unknown 867.4
Ventral posterolateral thalamic nucleus
nTPM: 881.9
2578 Male, age 74, both hemispheres 896.6
2197 Male, age 80, both hemispheres 885.5
2570 Male, age 75, right hemisphere 883.6
2740 Male, age 76, right hemisphere 878.7
2397 Male, age 61, right hemisphere 878.6
2581 Female, age 72, unknown 868.3
Ventral posteromedial thalamic nucleus
nTPM: 883.0
2653 Male, age 74, both hemispheres 899.4
2281 Male, age 75, right hemisphere 881.2
2127 Male, age 76, right hemisphere 879.7
2202 Male, age 61, left hemisphere 879.3
2758 Male, age 80, both hemispheres 875.6
Ventral thalamic nuclei
nTPM: 885.4
2291 Female, age 72, unknown 894.2
2580 Male, age 66, unknown 891.0
1845 Male, age 48, unknown 888.5
1860 Male, age 76, both hemispheres 887.7
1912 Female, age 42, unknown 886.9
2285 Male, age 62, unknown 885.4
2652 Male, age 74, left hemisphere 882.4
2204 Male, age 80, both hemispheres 881.1
2858 Female, age 72, unknown 870.9
Ventromedial nucleus
nTPM: 898.3
1982 Female, age 72, unknown 906.7
1822 Female, age 42, unknown 889.9
Zona incerta
nTPM: 887.9
2822 Male, age 74, right hemisphere 922.9
2215 Male, age 66, unknown 897.2
2403 Male, age 62, unknown 882.8
2208 Male, age 80, right hemisphere 869.5
2663 Female, age 72, unknown 867.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 226.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 226.6
FF:10154-103A1 76 years, female 226.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.2
Pig sample Sample description nTPM
Thalamus
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.4
Sample C Male 0.1
Sample D Male 0.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 276.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 276.9
Samples: 4

Max nTPM: 314.4
Min nTPM: 252.6
Sample A Male 263.8
Sample B Male 276.6
Sample C Female 314.4
Sample D Female 252.6

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 3.8
68498271 Antisense, RP_050113_01_F04, Mouse strain C57BL/6J (56 days, male) 3.8

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