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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:371.8 nTPM
GTEx:371.8 nTPM
FANTOM5:208.3 Scaled Tags Per Million
Pig:0.4 nTPM
Mouse:471.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 371.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 371.8
Samples: 105

Max nTPM: 503.6
Min nTPM: 244.3
Std nTPM: 52.4
Median nTPM:
153_1 70 years, female 503.6
35_1 74 years, female 493.0
246_1 77 years, male 483.9
17_1 71 years, male 468.6
322_1 76 years, male 467.0
447_1 81 years, male 458.4
384_1 83 years, male 457.5
379_1 60 years, male 456.7
377_1 82 years, female 452.4
375_1 74 years, female 448.0
189_1 76 years, male 445.4
389_1 86 years, female 445.3
2_1 77 years, female 444.8
319_1 81 years, male 443.3
321_1 62 years, female 441.3
120_1 70 years, female 438.3
404_1 82 years, female 432.3
126_1 63 years, male 431.9
526_1 61 years, male 426.0
396_1 62 years, male 419.5
452_1 88 years, female 416.5
4_1 88 years, female 414.3
145_1 84 years, male 414.2
237_1 82 years, male 409.9
315_1 62 years, female 406.8
139_1 64 years, female 403.7
405_1 91 years, male 402.5
218_1 71 years, female 401.9
173_1 67 years, male 401.2
394_1 75 years, female 400.3
414_1 84 years, female 399.4
109_1 81 years, female 396.5
307_1 66 years, female 394.9
6_1 73 years, female 392.8
320_1 89 years, female 391.2
265_1 87 years, male 389.4
266_1 85 years, male 389.2
137_1 83 years, male 388.3
243_1 75 years, male 385.1
386_1 76 years, male 384.4
376_1 75 years, female 381.8
142_1 61 years, female 381.2
162_1 79 years, female 381.0
355_1 70 years, female 379.3
254_1 77 years, female 377.1
347_1 72 years, male 376.9
518_1 75 years, female 376.8
229_1 69 years, female 375.7
317_1 60 years, male 374.4
318_1 68 years, male 371.0
18_1 88 years, male 369.5
468_1 89 years, male 369.1
177_1 74 years, male 368.0
503_1 68 years, male 365.0
311_1 78 years, male 364.4
316_1 62 years, male 363.9
42_1 85 years, male 363.1
495_1 57 years, female 362.8
308_1 70 years, female 362.7
354_1 81 years, female 360.4
217_1 76 years, male 359.4
324_1 76 years, male 359.2
335_1 73 years, female 358.3
119_1 70 years, female 355.3
295_1 61 years, female 350.4
99_1 64 years, male 348.0
415_1 77 years, female 347.4
163_1 78 years, male 347.2
172_1 72 years, female 345.5
115_1 83 years, male 344.7
251_1 78 years, male 343.6
351_1 91 years, male 342.0
288_1 66 years, female 340.5
406_1 79 years, male 340.3
286_1 68 years, female 337.7
352_1 62 years, male 337.0
499_1 55 years, female 336.4
349_1 83 years, male 336.2
413_1 59 years, female 332.6
313_1 79 years, female 330.0
425_1 59 years, female 328.6
353_1 82 years, female 327.7
117_1 61 years, male 327.5
41_1 94 years, female 326.1
291_1 76 years, male 324.3
506_1 65 years, male 322.1
480_1 63 years, male 320.7
356_1 87 years, female 318.2
81_1 67 years, male 317.6
292_1 71 years, male 317.5
89_1 63 years, male 317.4
293_1 68 years, female 317.1
348_1 84 years, male 315.3
517_1 88 years, male 314.2
501_1 88 years, male 312.3
350_1 84 years, female 311.6
466_1 57 years, female 304.3
264_1 73 years, female 303.7
9_1 66 years, female 301.3
32_1 67 years, male 298.8
314_1 67 years, male 296.3
491_1 89 years, female 293.5
43_1 64 years, female 274.3
149_1 88 years, male 252.3
490_1 67 years, female 244.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 208.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 208.3
FF:10030-101E3 24-65 years, mixed 208.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.4
Pig sample Sample description nTPM
Retina
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 471.1
Mouse sample Sample description nTPM
Retina
nTPM: 471.1
Samples: 4

Max nTPM: 518.1
Min nTPM: 395.6
Sample A Male 501.0
Sample B Male 395.6
Sample C Female 518.1
Sample D Female 469.8

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.