We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PFDN5
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PFDN5
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:907.4 nTPM
HPA:907.4 nTPM
FANTOM5:198.3 Scaled Tags Per Million
Pig:0.1 nTPM
Allen mouse:3.6 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 907.4
Sample id Sample description nTPM
Area postrema
nTPM: 895.4
2799 Male, age 61, both hemispheres 914.8
2306 Male, age 80, both hemispheres 902.0
2054 Male, age 76, both hemispheres 869.4
Cuneate nuclei
nTPM: 880.9
2376 Male, age 61, both hemispheres 891.7
2381 Male, age 80, both hemispheres 885.0
2131 Male, age 76, both hemispheres 865.9
Dorsal medullary reticular nucleus
nTPM: 889.1
2373 Male, age 61, both hemispheres 897.9
2040 Female, age 85, both hemispheres 893.5
2088 Male, age 76, both hemispheres 875.8
Dorsal motor vagal complex
nTPM: 895.1
2797 Male, age 61, both hemispheres 943.2
2643 Male, age 74, both hemispheres 911.7
2133 Female, age 91, both hemispheres 894.7
2844 Male, age 55, unknown 892.5
2807 Female, age 85, both hemispheres 884.3
2000 Male, age 74, unknown 881.6
2813 Female, age 72, unknown 879.7
2185 Male, age 76, both hemispheres 872.9
Gigantocellular reticular nuclei, medullary
nTPM: 886.1
2314 Male, age 61, both hemispheres 912.3
1876 Female, age 85, both hemispheres 889.7
2387 Female, age 91, both hemispheres 883.0
2022 Male, age 76, right hemisphere 882.1
2310 Male, age 80, both hemispheres 879.0
2462 Male, age 74, both hemispheres 870.3
Gigantocellular reticular nuclei, pars
nTPM: 882.0
2084 Female, age 85, both hemispheres 898.1
2706 Male, age 80, both hemispheres 879.5
2336 Male, age 61, both hemispheres 878.5
2168 Male, age 76, both hemispheres 878.3
2330 Male, age 80, both hemispheres 875.4
Inferior olive
nTPM: 900.7
2563 Male, age 74, both hemispheres 904.6
2178 Male, age 61, both hemispheres 903.5
2085 Female, age 85, both hemispheres 902.7
2379 Male, age 80, both hemispheres 897.9
2628 Female, age 91, both hemispheres 895.0
Lateral medullary reticular nucleus
nTPM: 896.6
2804 Female, age 91, both hemispheres 903.6
2852 Male, age 80, both hemispheres 903.3
2305 Male, age 74, both hemispheres 901.8
2190 Female, age 85, both hemispheres 900.2
2374 Male, age 61, both hemispheres 891.5
2044 Male, age 76, both hemispheres 879.2
Medial vestibular nucleus
nTPM: 894.2
2803 Female, age 91, both hemispheres 907.6
2624 Male, age 61, both hemispheres 899.7
2801 Male, age 74, both hemispheres 897.0
2093 Male, age 80, both hemispheres 893.6
2743 Female, age 85, both hemispheres 889.8
2134 Male, age 76, both hemispheres 877.5
Motor hypoglossal nucleus
nTPM: 888.6
2132 Female, age 85, both hemispheres 906.9
2125 Female, age 91, both hemispheres 904.3
2182 Male, age 80, both hemispheres 899.4
2461 Male, age 61, both hemispheres 870.8
2277 Male, age 76, both hemispheres 861.8
Nucleus ambiguus
nTPM: 886.3
2071 Male, age 76, both hemispheres 899.3
2096 Female, age 85, both hemispheres 873.3
Nucleus cuneatus
nTPM: 890.7
2808 Female, age 85, both hemispheres 904.6
2805 Female, age 91, both hemispheres 903.6
2564 Male, age 74, both hemispheres 894.1
2380 Male, age 80, both hemispheres 889.2
2562 Male, age 61, both hemispheres 884.6
2100 Male, age 76, both hemispheres 867.9
Nucleus gracilis
nTPM: 898.6
2627 Male, age 74, both hemispheres 907.8
2382 Male, age 80, both hemispheres 900.2
2299 Female, age 85, both hemispheres 887.7
Nucleus raphe magnus
nTPM: 878.1
2160 Male, age 61, both hemispheres 881.8
2051 Male, age 76, both hemispheres 881.3
2459 Female, age 91, both hemispheres 878.6
2328 Male, age 80, both hemispheres 875.8
2455 Male, age 74, both hemispheres 875.8
2172 Female, age 85, both hemispheres 875.4
Nucleus raphe obscurus
nTPM: 907.4
2845 Female, age 85, midline 914.2
2800 Male, age 61, midline 906.7
2142 Male, age 76, midline 901.5
Nucleus raphe pallidus
nTPM: 902.4
1924 Male, age 61, midline 917.5
2183 Male, age 80, midline 897.4
2145 Male, age 76, midline 892.2
Nucleus tractus solitarii
nTPM: 881.5
2144 Female, age 91, right hemisphere 905.2
2191 Female, age 85, both hemispheres 884.4
2656 Male, age 76, both hemispheres 872.4
2307 Male, age 80, both hemispheres 864.1
Parvicellular reticular nuclei
nTPM: 886.6
2095 Male, age 76, both hemispheres 894.6
2119 Male, age 80, both hemispheres 893.7
2558 Male, age 74, both hemispheres 871.6
Parvicellular reticular nuclei, medullary
nTPM: 893.5
2189 Female, age 91, both hemispheres 898.7
2091 Female, age 85, both hemispheres 892.8
2181 Male, age 80, left hemisphere 889.0
Peritrigeminal nucleus
nTPM: 899.1
2067 Female, age 85, both hemispheres 908.2
2136 Male, age 76, both hemispheres 900.6
2179 Male, age 61, both hemispheres 888.5
Prepositus hypoglossal nucleus
nTPM: 894.2
2855 Female, age 85, right hemisphere 902.8
2086 Male, age 80, both hemispheres 885.6
Spinal trigeminal nucleus, caudal
nTPM: 886.1
2642 Male, age 74, both hemispheres 892.5
2312 Male, age 61, both hemispheres 890.1
2308 Male, age 80, both hemispheres 887.6
2390 Female, age 91, both hemispheres 882.0
2447 Male, age 76, both hemispheres 878.1
Spinal trigeminal nucleus, interpolar
nTPM: 890.5
2066 Male, age 76, right hemisphere 896.4
2389 Female, age 91, both hemispheres 890.5
2033 Male, age 80, both hemispheres 889.8
2625 Male, age 61, both hemispheres 889.7
2386 Female, age 85, both hemispheres 886.3
Spinal vestibular nucleus
nTPM: 906.0
2384 Male, age 74, both hemispheres 919.9
2796 Male, age 61, both hemispheres 911.7
2780 Male, age 80, both hemispheres 908.8
2806 Female, age 85, both hemispheres 907.2
2748 Male, age 76, both hemispheres 894.7
2186 Female, age 91, both hemispheres 893.4
Ventral medullary reticular nucleus
nTPM: 897.8
2372 Male, age 61, both hemispheres 909.5
2060 Male, age 76, both hemispheres 886.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 899.3
2118 Male, age 80, both hemispheres 908.5
2302 Female, age 91, both hemispheres 899.6
2180 Male, age 61, both hemispheres 897.8
1986 Male, age 76, both hemispheres 896.7
2741 Female, age 85, both hemispheres 894.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 198.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 198.3
FF:10174-103C3 60 years, female 230.0
FF:10155-103A2 76 years, female 189.1
FF:10038-101F2 18-64 years, mixed 175.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 3.6
68498271 Antisense, RP_050113_01_F04, Mouse strain C57BL/6J (56 days, male) 3.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.