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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:935.9 nTPM
HPA:935.9 nTPM
GTEx:916.1 nTPM
FANTOM5:209.4 Scaled Tags Per Million
Pig:0.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 935.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 909.2
1981 Female, age 72, midline 923.2
2565 Male, age 75, midline 920.0
2048 Male, age 55, midline 907.1
2194 Female, age 79, both hemispheres 903.7
2816 Male, age 47, midline 892.1
Cervical spinal cord, dorsal horn
nTPM: 904.3
2296 Male, age 66, both hemispheres 932.1
2173 Female, age 72, unknown 929.6
2069 Male, age 47, both hemispheres 918.2
1877 Male, age 55, unknown 910.2
2297 Male, age 75, both hemispheres 873.8
2721 Male, age 90, both hemispheres 861.9
Cervical spinal cord, ventral horn
nTPM: 935.9
2480 Male, age 75, both hemispheres 982.5
2809 Male, age 90, both hemispheres 965.1
2098 Female, age 72, unknown 949.3
2295 Male, age 66, both hemispheres 928.4
2068 Male, age 55, unknown 910.3
2820 Female, age 79, both hemispheres 879.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 916.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 916.1
Samples: 159

Max nTPM: 1908.2
Min nTPM: 281.9
Std nTPM: 314.3
Median nTPM: 856.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1908.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1817.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1646.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1631.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1604.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1520.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1497.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1453.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1427.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1421.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1412.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1410.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1406.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1405.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1394.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1387.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1382.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1367.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1342.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1337.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1315.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1307.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1301.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1300.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1294.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1251.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1235.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1225.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1218.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1217.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1211.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1211.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1196.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1192.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1188.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1177.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1176.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1164.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1144.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1135.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1133.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1127.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1089.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1084.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1083.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1080.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1070.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1066.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1059.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1022.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1020.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1013.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1000.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1000.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 996.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 996.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 977.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 971.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 967.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 965.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 959.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 953.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 952.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 947.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 945.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 943.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 941.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 941.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 930.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 929.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 921.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 909.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 907.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 899.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 894.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 884.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 881.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 869.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 858.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 856.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 855.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 855.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 852.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 850.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 842.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 839.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 836.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 834.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 820.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 818.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 818.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 810.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 805.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 801.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 778.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 778.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 777.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 777.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 773.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 771.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 771.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 771.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 763.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 762.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 757.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 738.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 737.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 733.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 727.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 725.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 720.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 707.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 707.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 706.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 695.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 682.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 681.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 680.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 680.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 674.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 668.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 667.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 667.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 662.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 650.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 642.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 632.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 625.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 625.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 613.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 604.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 603.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 592.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 589.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 589.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 585.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 580.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 580.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 578.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 575.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 573.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 571.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 554.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 540.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 529.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 527.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 523.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 522.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 520.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 515.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 508.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 500.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 478.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 473.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 448.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 433.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 419.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 374.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 281.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 209.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 209.4
FF:10181-103D1 60 years, female 226.7
FF:10159-103A6 76 years, female 192.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.2
Ventral spinal cord
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 0.1

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