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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:910.7 nTPM
HPA:910.7 nTPM
FANTOM5:219.4 Scaled Tags Per Million
Pig:0.1 nTPM
Allen mouse:3.3 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 910.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 897.3
2188 Female, age 91, both hemispheres 914.9
2090 Male, age 80, both hemispheres 905.1
2301 Female, age 85, both hemispheres 894.5
1984 Male, age 76, both hemispheres 874.7
Dorsal cochlear nucleus
nTPM: 894.8
2802 Male, age 74, right hemisphere 913.5
2187 Female, age 91, both hemispheres 904.7
2370 Male, age 61, both hemispheres 895.1
2378 Male, age 80, both hemispheres 883.9
2058 Male, age 76, both hemispheres 876.7
Dorsal tegmental nucleus
nTPM: 896.5
2083 Male, age 80, both hemispheres 911.7
2326 Male, age 74, both hemispheres 909.1
2358 Male, age 61, both hemispheres 884.6
1936 Male, age 76, left hemisphere 880.5
Dorsolateral tegmental area
nTPM: 896.9
2654 Male, age 80, both hemispheres 908.1
2337 Male, age 61, both hemispheres 905.9
2751 Female, age 85, both hemispheres 899.7
2360 Male, age 74, both hemispheres 890.8
2141 Male, age 76, both hemispheres 879.9
Kolliker-Fuse nucleus
nTPM: 892.7
2163 Male, age 80, both hemispheres 895.3
2315 Male, age 76, right hemisphere 892.3
2793 Female, age 91, left hemisphere 890.4
Lateral lemniscal nuclei
nTPM: 874.1
2169 Male, age 76, both hemispheres 887.4
2746 Female, age 85, left hemisphere 887.0
2453 Male, age 74, right hemisphere 873.5
2320 Female, age 91, left hemisphere 869.2
2036 Male, age 80, both hemispheres 853.1
Lateral parabrachial nucleus
nTPM: 893.3
2792 Male, age 76, both hemispheres 904.2
2013 Male, age 80, both hemispheres 902.1
2139 Female, age 85, right hemisphere 892.2
2790 Male, age 61, both hemispheres 874.6
Lateral vestibular nucleus
nTPM: 889.1
2311 Male, age 80, both hemispheres 903.5
2184 Male, age 76, both hemispheres 874.8
Locus coeruleus
nTPM: 885.1
2720 Male, age 74, both hemispheres 897.0
2788 Male, age 74, unknown 895.5
2123 Female, age 91, both hemispheres 891.8
2014 Male, age 55, unknown 884.3
2162 Male, age 80, both hemispheres 883.3
2317 Female, age 72, unknown 873.7
1980 Male, age 76, both hemispheres 869.8
Medial olivary nucleus
nTPM: 910.7
1943 Male, age 61, both hemispheres 922.8
2138 Female, age 91, both hemispheres 918.5
1962 Male, age 76, both hemispheres 904.8
2851 Male, age 80, both hemispheres 896.7
Medial parabrachial nucleus
nTPM: 892.9
2170 Female, age 91, both hemispheres 921.2
2854 Male, age 80, both hemispheres 892.5
2786 Male, age 76, both hemispheres 886.9
2463 Female, age 85, right hemisphere 884.8
2156 Male, age 61, both hemispheres 879.3
Medial periolivary nuclei
nTPM: 885.0
2063 Male, age 76, both hemispheres 898.2
2081 Male, age 80, both hemispheres 892.0
2458 Female, age 91, both hemispheres 885.2
2171 Female, age 85, both hemispheres 880.0
2791 Male, age 74, right hemisphere 869.5
Motor facial nucleus
nTPM: 882.7
2062 Male, age 76, both hemispheres 896.8
2126 Male, age 61, both hemispheres 890.0
2697 Female, age 85, both hemispheres 888.8
2795 Female, age 91, both hemispheres 880.3
2365 Male, age 74, right hemisphere 877.3
2327 Male, age 80, both hemispheres 862.8
Motor trigeminal nucleus
nTPM: 885.5
2309 Male, age 76, both hemispheres 890.9
2560 Male, age 74, both hemispheres 888.5
2335 Male, age 61, both hemispheres 888.3
2321 Female, age 91, both hemispheres 882.4
2079 Male, age 80, both hemispheres 877.2
Nuclei of the trapezoid body
nTPM: 886.4
1983 Male, age 76, both hemispheres 909.7
2159 Male, age 61, both hemispheres 887.7
2166 Male, age 80, both hemispheres 886.2
2735 Female, age 85, both hemispheres 874.5
2368 Female, age 91, both hemispheres 874.2
Paramedian reticular nucleus
nTPM: 894.4
2052 Male, age 76, both hemispheres 901.2
2313 Male, age 61, both hemispheres 894.1
2057 Male, age 80, both hemispheres 893.9
2050 Female, age 85, both hemispheres 888.5
Pontine nuclei
nTPM: 893.0
2319 Female, age 91, both hemispheres 896.2
2787 Female, age 85, both hemispheres 895.8
1863 Male, age 55, unknown 895.4
2115 Male, age 80, left hemisphere 892.6
1968 Male, age 76, left hemisphere 892.5
2109 Female, age 72, unknown 891.6
2454 Male, age 74, left hemisphere 890.0
2727 Male, age 61, right hemisphere 889.7
Pontine raphe nucleus
nTPM: 885.3
2122 Female, age 85, midline 885.7
2853 Male, age 76, midline 885.0
Posteroventral cochlear nucleus
nTPM: 907.5
2341 Male, age 80, both hemispheres 930.3
2135 Female, age 91, both hemispheres 922.4
2371 Male, age 61, both hemispheres 904.1
2752 Female, age 85, both hemispheres 896.6
2070 Male, age 76, both hemispheres 884.1
Principal sensory trigeminal nucleus
nTPM: 879.7
2158 Male, age 61, both hemispheres 890.6
2367 Female, age 91, left hemisphere 883.2
2324 Male, age 76, both hemispheres 877.3
2008 Male, age 80, left hemisphere 867.5
Reticular pontine nucleus, caudal
nTPM: 889.2
2092 Male, age 76, both hemispheres 900.1
2559 Male, age 74, both hemispheres 898.7
2457 Female, age 91, both hemispheres 895.8
2332 Male, age 80, right hemisphere 862.3
Reticular pontine nucleus, oral
nTPM: 886.7
1939 Male, age 80, both hemispheres 898.1
2366 Female, age 91, both hemispheres 893.3
2167 Male, age 76, both hemispheres 892.1
2012 Female, age 85, both hemispheres 877.7
2361 Male, age 74, both hemispheres 872.5
Reticulotegmental nucleus
nTPM: 889.4
2452 Male, age 74, both hemispheres 903.5
2322 Female, age 91, both hemispheres 891.5
2325 Male, age 76, both hemispheres 883.6
2333 Male, age 80, both hemispheres 879.0
Spinal trigeminal nucleus, oral
nTPM: 881.5
2164 Male, age 80, both hemispheres 883.4
1978 Male, age 76, both hemispheres 880.8
2737 Female, age 85, both hemispheres 880.4
Subcoeruleus area
nTPM: 891.1
2451 Male, age 74, both hemispheres 906.1
2369 Female, age 85, left hemisphere 897.5
1958 Male, age 80, both hemispheres 892.1
2323 Female, age 91, left hemisphere 883.6
2089 Male, age 76, left hemisphere 876.2
Superior olive
nTPM: 881.3
2020 Male, age 76, both hemispheres 902.3
1875 Female, age 85, both hemispheres 880.7
2561 Female, age 91, both hemispheres 877.9
2329 Male, age 80, right hemisphere 873.9
2364 Male, age 74, right hemisphere 871.6
Superior vestibular nucleus
nTPM: 899.8
2383 Male, age 74, both hemispheres 911.2
2015 Male, age 80, both hemispheres 900.4
2061 Male, age 76, both hemispheres 887.7
Ventral periolivary nuclei
nTPM: 882.1
2023 Male, age 76, both hemispheres 895.6
2165 Male, age 80, both hemispheres 885.8
2794 Female, age 91, left hemisphere 873.7
2130 Female, age 85, both hemispheres 873.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 883.1
1959 Male, age 76, both hemispheres 891.9
2359 Male, age 61, both hemispheres 887.0
2840 Female, age 85, both hemispheres 886.5
2161 Male, age 80, both hemispheres 885.0
2456 Female, age 91, both hemispheres 878.0
2449 Male, age 74, both hemispheres 870.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 219.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 219.4
FF:10165-103B3 76 years, female 233.1
FF:10182-103D2 60 years, female 205.7
Pons
Scaled Tags Per Million: 163.9
FF:10033-101E6 18-54 years, mixed 163.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 0.1
Pig sample Sample description nTPM
Pons
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 0.0

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 3.3
68498271 Antisense, RP_050113_01_F04, Mouse strain C57BL/6J (56 days, male) 3.3

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