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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:903.9 nTPM
HPA:903.9 nTPM
GTEx:934.3 nTPM
FANTOM5:196.8 Scaled Tags Per Million
Pig:0.2 nTPM
Mouse:288.8 nTPM
Allen mouse:4.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 903.9
Sample id Sample description nTPM
Amygdala
nTPM: 903.9
2695 Female, age 67, right hemisphere 937.7
2514 Male, age 75, right hemisphere 906.9
2517 Female, age 94, left hemisphere 893.3
2814 Male, age 76, right hemisphere 893.3
1987 Female, age 91, left hemisphere 888.0
Basal amygdala
nTPM: 883.4
2827 Female, age 67, right hemisphere 911.1
2110 Male, age 80, left hemisphere 883.9
2609 Male, age 75, right hemisphere 882.8
1955 Male, age 76, both hemispheres 875.9
2685 Female, age 94, left hemisphere 873.8
2243 Female, age 91, right hemisphere 872.9
Central amygdala
nTPM: 894.3
2826 Female, age 94, left hemisphere 943.8
2515 Male, age 75, right hemisphere 902.3
1905 Male, age 76, both hemispheres 879.4
2239 Male, age 80, left hemisphere 877.1
2701 Female, age 91, right hemisphere 868.9
Corticomedial amygdala
nTPM: 881.1
2428 Male, age 75, right hemisphere 890.3
2240 Male, age 76, both hemispheres 885.7
2535 Female, age 67, right hemisphere 882.3
2829 Male, age 80, left hemisphere 880.3
2242 Female, age 91, right hemisphere 874.4
2429 Female, age 94, left hemisphere 873.5
Lateral amygdala
nTPM: 899.5
2830 Female, age 67, right hemisphere 945.2
2516 Male, age 75, right hemisphere 922.0
2534 Female, age 94, left hemisphere 912.4
1883 Male, age 76, both hemispheres 877.7
2256 Male, age 80, left hemisphere 874.8
2255 Female, age 91, right hemisphere 864.9
Stria terminalis, bed nucleus
nTPM: 872.9
1974 Female, age 91, both hemispheres 888.4
2201 Male, age 74, unknown 871.1
2486 Female, age 94, both hemispheres 859.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 934.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 934.3
Samples: 152

Max nTPM: 2806.4
Min nTPM: 473.5
Std nTPM: 373.5
Median nTPM: 851.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2806.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2514.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2275.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2122.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1979.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1919.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1796.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1782.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1691.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1543.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1367.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1336.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1320.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1314.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1302.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1295.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1293.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1267.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1263.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1235.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1224.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1218.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1207.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1203.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1185.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1183.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1170.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1152.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1145.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1135.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1125.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1114.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1110.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1072.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1058.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1057.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1047.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1046.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1039.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1022.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1020.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1017.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1014.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1003.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1000.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 996.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 988.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 974.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 971.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 967.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 967.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 964.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 954.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 944.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 941.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 941.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 938.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 937.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 937.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 933.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 929.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 917.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 915.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 913.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 908.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 905.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 895.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 893.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 879.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 873.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 871.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 859.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 856.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 853.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 852.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 851.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 851.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 841.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 836.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 834.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 825.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 818.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 816.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 808.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 800.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 798.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 794.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 793.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 792.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 791.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 788.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 782.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 781.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 779.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 779.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 778.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 773.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 771.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 767.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 762.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 759.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 755.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 749.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 744.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 744.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 740.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 719.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 714.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 714.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 711.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 710.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 704.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 702.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 702.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 699.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 698.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 693.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 689.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 689.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 689.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 677.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 676.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 675.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 669.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 666.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 661.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 657.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 652.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 645.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 644.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 640.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 638.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 630.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 627.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 619.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 594.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 588.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 587.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 587.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 567.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 563.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 550.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 545.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 533.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 533.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 532.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 517.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 512.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 509.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 502.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 495.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 473.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 196.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 196.8
FF:10151-102I7 76 years, female 196.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.2
Pig sample Sample description nTPM
Amygdala
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.3
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 288.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 288.8
Samples: 4

Max nTPM: 314.4
Min nTPM: 261.5
Sample A Male 261.5
Sample B Male 305.7
Sample C Female 314.4
Sample D Female 273.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.9
68498271 Antisense, RP_050113_01_F04, Mouse strain C57BL/6J (56 days, male) 4.9

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