MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:899.1 nTPM
HPA:899.1 nTPM
GTEx:945.8 nTPM
FANTOM5:278.5 Scaled Tags Per Million
Pig:0.3 nTPM
Mouse:258.9 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 899.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 887.6
2666 Male, age 74, left hemisphere 908.0
2411 Female, age 72, unknown 895.1
1870 Female, age 42, unknown 893.7
2828 Female, age 72, unknown 887.7
2019 Male, age 18, unknown 886.7
1827 Male, age 72, unknown 885.5
1833 Male, age 53, unknown 885.3
1830 Male, age 51, unknown 882.6
2586 Male, age 75, left hemisphere 876.0
2219 Male, age 76, both hemispheres 875.2
Dorsal raphe nucleus
nTPM: 886.4
2298 Female, age 72, unknown 895.6
1828 Male, age 53, unknown 890.1
2016 Female, age 72, unknown 884.7
2750 Male, age 76, both hemispheres 883.8
2047 Male, age 72, unknown 877.9
Inferior colliculus
nTPM: 886.2
2849 Male, age 72, unknown 889.8
1890 Male, age 53, unknown 887.8
2097 Female, age 72, unknown 886.2
1848 Female, age 42, unknown 880.9
Median raphe nucleus
nTPM: 886.4
2220 Male, age 76, midline 886.4
Pedunculopontine tegmental nucleus
nTPM: 891.8
2338 Male, age 61, both hemispheres 901.4
2334 Male, age 80, both hemispheres 895.9
1921 Female, age 85, both hemispheres 878.1
Periaquaductal grey, anterior
nTPM: 889.5
2502 Female, age 75, unknown 896.7
1947 Male, age 18, unknown 887.9
1795 Male, age 51, unknown 883.8
Periaquaductal grey, dorsal
nTPM: 889.4
1840 Male, age 53, unknown 904.4
2850 Male, age 76, both hemispheres 892.3
2464 Female, age 72, unknown 881.0
1831 Male, age 72, unknown 879.8
Periaquaductal grey, lateral
nTPM: 883.5
2140 Male, age 76, both hemispheres 889.2
2053 Male, age 18, unknown 883.1
2272 Male, age 74, both hemispheres 878.2
Pretectal area
nTPM: 884.9
1817 Female, age 42, unknown 892.5
2825 Male, age 18, unknown 892.5
1815 Male, age 53, unknown 888.8
1944 Female, age 72, unknown 888.4
2007 Male, age 72, unknown 886.6
2224 Female, age 72, unknown 886.2
1816 Male, age 51, unknown 883.8
2273 Male, age 74, both hemispheres 881.1
2316 Male, age 76, right hemisphere 881.0
2667 Female, age 75, unknown 876.8
2407 Male, age 75, both hemispheres 875.9
Red nucleus
nTPM: 898.9
2503 Female, age 72, unknown 924.6
2725 Female, age 75, unknown 916.0
1865 Male, age 51, unknown 906.1
2588 Male, age 74, left hemisphere 903.8
1821 Female, age 72, unknown 900.9
1904 Male, age 53, unknown 899.1
2227 Male, age 72, unknown 896.9
2769 Male, age 72, unknown 895.9
1954 Female, age 42, unknown 893.3
2785 Male, age 18, unknown 887.9
2584 Male, age 75, left hemisphere 887.0
2823 Male, age 76, right hemisphere 875.5
Substantia nigra
nTPM: 899.1
2409 Female, age 72, unknown 918.6
1851 Male, age 51, unknown 917.2
2241 Male, age 72, unknown 916.4
1916 Female, age 42, unknown 905.2
2699 Male, age 18, unknown 904.8
2665 Male, age 74, both hemispheres 904.7
1889 Female, age 72, unknown 887.9
2590 Female, age 75, unknown 885.2
1941 Male, age 53, unknown 878.8
2583 Male, age 75, right hemisphere 871.9
Superior colliculus
nTPM: 887.4
2587 Male, age 74, left hemisphere 915.7
1913 Female, age 42, unknown 893.8
1995 Male, age 72, unknown 889.0
1796 Male, age 53, unknown 885.9
2668 Female, age 75, unknown 885.8
2261 Male, age 18, unknown 885.0
2087 Female, age 72, unknown 882.4
1839 Male, age 51, unknown 882.2
1895 Male, age 76, right hemisphere 880.0
2664 Male, age 75, both hemispheres 874.5
Ventral tegmental area
nTPM: 894.0
1915 Female, age 42, unknown 908.3
2223 Female, age 72, unknown 902.7
2410 Female, age 72, unknown 892.8
2021 Male, age 53, unknown 890.5
1942 Male, age 51, unknown 886.6
2218 Male, age 76, both hemispheres 883.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 945.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 945.8
Samples: 139

Max nTPM: 3423.1
Min nTPM: 404.0
Std nTPM: 403.7
Median nTPM: 837.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3423.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2513.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2253.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2107.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1795.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1686.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1611.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1603.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1595.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1558.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1438.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 278.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 278.5
FF:10158-103A5 76 years, female 278.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.3
Pig sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.2
Periaqueductal gray
nTPM: 0.3
Samples: 3

Max nTPM: 0.3
Min nTPM: 0.2
Sample B Female 0.2
Sample C Male 0.3
Sample D Male 0.3
Substantia nigra
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.1
Superior colliculi
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 258.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 259.0
Samples: 4

Max nTPM: 293.5
Min nTPM: 234.2
Sample A Male 293.5
Sample B Male 249.2
Sample C Female 234.2
Sample D Female 258.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
68498271 Antisense, RP_050113_01_F04, Mouse strain C57BL/6J (56 days, male) 4.8

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.