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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1071.9 nTPM
HPA:1071.9 nTPM
GTEx:1119.9 nTPM
FANTOM5:1447.3 Scaled Tags Per Million
Pig:1075.3 nTPM
Mouse:1072.8 nTPM
Allen mouse:32.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1071.9
Sample id Sample description nTPM
Amygdala
nTPM: 890.1
2814 Male, age 76, right hemisphere 1005.4
1987 Female, age 91, left hemisphere 886.4
2695 Female, age 67, right hemisphere 886.0
2514 Male, age 75, right hemisphere 839.5
2517 Female, age 94, left hemisphere 833.4
Basal amygdala
nTPM: 846.4
2685 Female, age 94, left hemisphere 892.6
1955 Male, age 76, both hemispheres 873.8
2243 Female, age 91, right hemisphere 873.4
2110 Male, age 80, left hemisphere 822.0
2827 Female, age 67, right hemisphere 812.3
2609 Male, age 75, right hemisphere 804.1
Central amygdala
nTPM: 917.1
1905 Male, age 76, both hemispheres 1001.8
2826 Female, age 94, left hemisphere 995.0
2239 Male, age 80, left hemisphere 893.8
2515 Male, age 75, right hemisphere 860.1
2701 Female, age 91, right hemisphere 834.7
Corticomedial amygdala
nTPM: 835.4
2240 Male, age 76, both hemispheres 885.2
2429 Female, age 94, left hemisphere 856.7
2242 Female, age 91, right hemisphere 833.9
2829 Male, age 80, left hemisphere 825.7
2535 Female, age 67, right hemisphere 807.4
2428 Male, age 75, right hemisphere 803.7
Lateral amygdala
nTPM: 897.4
2534 Female, age 94, left hemisphere 1069.9
1883 Male, age 76, both hemispheres 977.6
2830 Female, age 67, right hemisphere 869.1
2256 Male, age 80, left hemisphere 868.4
2516 Male, age 75, right hemisphere 811.1
2255 Female, age 91, right hemisphere 787.9
Stria terminalis, bed nucleus
nTPM: 1071.9
1974 Female, age 91, both hemispheres 1219.5
2486 Female, age 94, both hemispheres 1095.6
2201 Male, age 74, unknown 900.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1119.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1119.9
Samples: 152

Max nTPM: 4100.9
Min nTPM: 213.7
Std nTPM: 646.0
Median nTPM: 961.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 4100.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4095.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3046.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2581.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2415.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2276.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2219.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2210.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2147.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2075.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2054.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 2029.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2013.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1998.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1895.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1884.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1823.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1816.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1801.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1800.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1789.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1777.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1761.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1759.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1742.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1735.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1712.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1684.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1640.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1637.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1634.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1633.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1614.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1610.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1594.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1560.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1516.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1507.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1466.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1441.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1425.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1412.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1408.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1346.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1342.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1317.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1285.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1278.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1270.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1260.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1241.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1241.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1217.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1210.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1208.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1204.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1199.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1185.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1172.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1169.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1168.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1135.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1133.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1122.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1108.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1107.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1096.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1071.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1038.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 992.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 991.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 991.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 985.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 982.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 977.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 965.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 958.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 924.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 892.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 888.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 879.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 876.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 870.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 869.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 857.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 852.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 850.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 849.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 849.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 846.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 840.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 839.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 830.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 829.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 813.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 811.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 811.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 804.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 800.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 779.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 765.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 752.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 747.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 720.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 716.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 706.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 698.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 693.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 688.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 674.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 666.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 664.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 664.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 662.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 660.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 632.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 631.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 608.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 606.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 603.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 598.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 596.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 587.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 580.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 569.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 567.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 563.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 518.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 515.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 514.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 510.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 507.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 507.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 502.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 496.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 481.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 469.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 468.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 468.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 451.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 446.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 446.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 440.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 431.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 383.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 369.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 364.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 352.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 328.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 320.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 295.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 213.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1447.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1447.3
FF:10151-102I7 76 years, female 1447.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1075.3
Pig sample Sample description nTPM
Amygdala
nTPM: 1075.3
Samples: 4

Max nTPM: 1419.1
Min nTPM: 825.7
Sample A Female 1419.1
Sample B Female 980.5
Sample C Male 1075.8
Sample D Male 825.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1072.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 1072.9
Samples: 4

Max nTPM: 1179.0
Min nTPM: 996.5
Sample A Male 1179.0
Sample B Male 1075.8
Sample C Female 996.5
Sample D Female 1040.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 32.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 32.1
77465048 Antisense, RP_070129_03_A07, Mouse strain C57BL/6J (56 days, male) 32.1

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