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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:652.9 nTPM
GTEx:652.9 nTPM
FANTOM5:1430.2 Scaled Tags Per Million
Pig:563.5 nTPM
Mouse:1785.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 652.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 652.9
Samples: 105

Max nTPM: 1216.3
Min nTPM: 243.9
Std nTPM: 166.8
Median nTPM:
2_1 77 years, female 1216.3
377_1 82 years, female 1116.1
321_1 62 years, female 1034.9
425_1 59 years, female 1002.2
316_1 62 years, male 966.0
293_1 68 years, female 937.3
266_1 85 years, male 921.6
35_1 74 years, female 892.7
163_1 78 years, male 864.1
405_1 91 years, male 860.9
172_1 72 years, female 860.5
243_1 75 years, male 854.9
447_1 81 years, male 847.2
319_1 81 years, male 844.7
17_1 71 years, male 832.7
404_1 82 years, female 827.1
406_1 79 years, male 812.7
237_1 82 years, male 783.8
526_1 61 years, male 772.8
335_1 73 years, female 772.7
153_1 70 years, female 768.4
229_1 69 years, female 760.5
376_1 75 years, female 754.4
311_1 78 years, male 751.5
4_1 88 years, female 747.6
347_1 72 years, male 742.8
320_1 89 years, female 741.2
322_1 76 years, male 741.1
126_1 63 years, male 739.9
292_1 71 years, male 739.8
6_1 73 years, female 739.7
350_1 84 years, female 739.2
480_1 63 years, male 736.4
177_1 74 years, male 730.6
468_1 89 years, male 719.8
286_1 68 years, female 718.7
115_1 83 years, male 714.5
251_1 78 years, male 708.5
246_1 77 years, male 708.2
318_1 68 years, male 703.9
353_1 82 years, female 701.9
117_1 61 years, male 697.4
265_1 87 years, male 691.4
189_1 76 years, male 687.6
18_1 88 years, male 673.0
348_1 84 years, male 672.0
120_1 70 years, female 669.0
375_1 74 years, female 667.6
218_1 71 years, female 666.6
217_1 76 years, male 664.3
495_1 57 years, female 649.2
356_1 87 years, female 647.4
503_1 68 years, male 645.7
506_1 65 years, male 643.4
386_1 76 years, male 639.7
173_1 67 years, male 619.0
313_1 79 years, female 616.2
99_1 64 years, male 614.0
355_1 70 years, female 612.9
145_1 84 years, male 610.0
324_1 76 years, male 608.4
42_1 85 years, male 607.1
137_1 83 years, male 599.8
139_1 64 years, female 592.9
415_1 77 years, female 591.6
254_1 77 years, female 590.2
351_1 91 years, male 580.1
452_1 88 years, female 577.8
396_1 62 years, male 568.5
517_1 88 years, male 567.4
499_1 55 years, female 566.2
81_1 67 years, male 557.2
142_1 61 years, female 555.6
162_1 79 years, female 553.2
307_1 66 years, female 550.3
119_1 70 years, female 549.2
518_1 75 years, female 545.1
109_1 81 years, female 540.5
349_1 83 years, male 537.3
295_1 61 years, female 534.1
9_1 66 years, female 533.2
291_1 76 years, male 531.5
379_1 60 years, male 529.5
414_1 84 years, female 528.4
384_1 83 years, male 525.4
389_1 86 years, female 524.8
41_1 94 years, female 522.7
352_1 62 years, male 522.6
288_1 66 years, female 506.8
264_1 73 years, female 495.0
314_1 67 years, male 490.7
394_1 75 years, female 477.3
501_1 88 years, male 472.2
413_1 59 years, female 464.9
317_1 60 years, male 457.0
43_1 64 years, female 447.4
354_1 81 years, female 447.1
32_1 67 years, male 431.6
308_1 70 years, female 411.3
89_1 63 years, male 385.1
315_1 62 years, female 376.8
466_1 57 years, female 363.7
149_1 88 years, male 351.1
490_1 67 years, female 330.5
491_1 89 years, female 243.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1430.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1430.2
FF:10030-101E3 24-65 years, mixed 1430.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 563.5
Pig sample Sample description nTPM
Retina
nTPM: 563.5
Samples: 4

Max nTPM: 714.9
Min nTPM: 427.7
Sample A Female 435.1
Sample B Female 676.3
Sample C Male 714.9
Sample D Male 427.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1785.5
Mouse sample Sample description nTPM
Retina
nTPM: 1785.5
Samples: 4

Max nTPM: 1962.3
Min nTPM: 1654.0
Sample A Male 1962.3
Sample B Male 1672.5
Sample C Female 1853.2
Sample D Female 1654.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.