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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1176.0 nTPM
HPA:1176.0 nTPM
FANTOM5:2550.8 Scaled Tags Per Million
Pig:2147.3 nTPM
Allen mouse:21.1 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 1176.0
Sample id Sample description nTPM
Area postrema
nTPM: 850.2
2306 Male, age 80, both hemispheres 856.0
2054 Male, age 76, both hemispheres 855.5
2799 Male, age 61, both hemispheres 839.2
Cuneate nuclei
nTPM: 918.6
2131 Male, age 76, both hemispheres 937.8
2376 Male, age 61, both hemispheres 913.8
2381 Male, age 80, both hemispheres 904.2
Dorsal medullary reticular nucleus
nTPM: 989.5
2040 Female, age 85, both hemispheres 1205.9
2373 Male, age 61, both hemispheres 895.3
2088 Male, age 76, both hemispheres 867.3
Dorsal motor vagal complex
nTPM: 942.9
2133 Female, age 91, both hemispheres 1170.8
2000 Male, age 74, unknown 1019.6
2844 Male, age 55, unknown 1019.0
2643 Male, age 74, both hemispheres 954.1
2813 Female, age 72, unknown 930.3
2807 Female, age 85, both hemispheres 865.0
2185 Male, age 76, both hemispheres 807.9
2797 Male, age 61, both hemispheres 776.4
Gigantocellular reticular nuclei, medullary
nTPM: 984.0
2462 Male, age 74, both hemispheres 1052.5
2387 Female, age 91, both hemispheres 1017.5
2310 Male, age 80, both hemispheres 1011.4
1876 Female, age 85, both hemispheres 984.2
2314 Male, age 61, both hemispheres 930.7
2022 Male, age 76, right hemisphere 907.7
Gigantocellular reticular nuclei, pars
nTPM: 1073.3
2168 Male, age 76, both hemispheres 1267.7
2084 Female, age 85, both hemispheres 1110.4
2336 Male, age 61, both hemispheres 1048.7
2330 Male, age 80, both hemispheres 971.9
2706 Male, age 80, both hemispheres 967.9
Inferior olive
nTPM: 954.7
2628 Female, age 91, both hemispheres 1076.1
2085 Female, age 85, both hemispheres 970.1
2563 Male, age 74, both hemispheres 967.2
2379 Male, age 80, both hemispheres 921.0
2178 Male, age 61, both hemispheres 839.0
Lateral medullary reticular nucleus
nTPM: 1014.5
2804 Female, age 91, both hemispheres 1133.3
2044 Male, age 76, both hemispheres 1076.4
2305 Male, age 74, both hemispheres 1051.2
2852 Male, age 80, both hemispheres 964.0
2190 Female, age 85, both hemispheres 954.0
2374 Male, age 61, both hemispheres 908.1
Medial vestibular nucleus
nTPM: 1087.2
2801 Male, age 74, both hemispheres 1210.0
2134 Male, age 76, both hemispheres 1147.6
2624 Male, age 61, both hemispheres 1104.1
2803 Female, age 91, both hemispheres 1070.1
2743 Female, age 85, both hemispheres 1011.0
2093 Male, age 80, both hemispheres 980.2
Motor hypoglossal nucleus
nTPM: 1078.4
2461 Male, age 61, both hemispheres 1252.9
2125 Female, age 91, both hemispheres 1139.2
2132 Female, age 85, both hemispheres 1115.4
2182 Male, age 80, both hemispheres 1024.6
2277 Male, age 76, both hemispheres 860.0
Nucleus ambiguus
nTPM: 971.4
2096 Female, age 85, both hemispheres 1041.4
2071 Male, age 76, both hemispheres 901.5
Nucleus cuneatus
nTPM: 914.5
2564 Male, age 74, both hemispheres 989.0
2380 Male, age 80, both hemispheres 919.7
2805 Female, age 91, both hemispheres 912.7
2562 Male, age 61, both hemispheres 894.4
2808 Female, age 85, both hemispheres 888.8
2100 Male, age 76, both hemispheres 882.6
Nucleus gracilis
nTPM: 899.2
2627 Male, age 74, both hemispheres 980.8
2382 Male, age 80, both hemispheres 912.1
2299 Female, age 85, both hemispheres 804.7
Nucleus raphe magnus
nTPM: 1149.6
2160 Male, age 61, both hemispheres 1449.3
2172 Female, age 85, both hemispheres 1216.5
2455 Male, age 74, both hemispheres 1119.0
2051 Male, age 76, both hemispheres 1065.4
2328 Male, age 80, both hemispheres 1034.2
2459 Female, age 91, both hemispheres 1013.0
Nucleus raphe obscurus
nTPM: 987.6
2845 Female, age 85, midline 1123.2
2800 Male, age 61, midline 995.9
2142 Male, age 76, midline 843.7
Nucleus raphe pallidus
nTPM: 1016.3
2183 Male, age 80, midline 1107.1
1924 Male, age 61, midline 1066.9
2145 Male, age 76, midline 874.8
Nucleus tractus solitarii
nTPM: 899.7
2191 Female, age 85, both hemispheres 925.2
2144 Female, age 91, right hemisphere 917.2
2656 Male, age 76, both hemispheres 905.6
2307 Male, age 80, both hemispheres 850.7
Parvicellular reticular nuclei
nTPM: 1046.6
2119 Male, age 80, both hemispheres 1072.9
2558 Male, age 74, both hemispheres 1039.1
2095 Male, age 76, both hemispheres 1028.0
Parvicellular reticular nuclei, medullary
nTPM: 1101.7
2091 Female, age 85, both hemispheres 1188.2
2189 Female, age 91, both hemispheres 1139.9
2181 Male, age 80, left hemisphere 977.1
Peritrigeminal nucleus
nTPM: 1056.6
2067 Female, age 85, both hemispheres 1062.7
2179 Male, age 61, both hemispheres 1055.7
2136 Male, age 76, both hemispheres 1051.4
Prepositus hypoglossal nucleus
nTPM: 996.2
2855 Female, age 85, right hemisphere 1104.6
2086 Male, age 80, both hemispheres 887.8
Spinal trigeminal nucleus, caudal
nTPM: 1004.2
2390 Female, age 91, both hemispheres 1309.4
2642 Male, age 74, both hemispheres 959.0
2447 Male, age 76, both hemispheres 944.1
2308 Male, age 80, both hemispheres 932.7
2312 Male, age 61, both hemispheres 876.0
Spinal trigeminal nucleus, interpolar
nTPM: 1176.0
2625 Male, age 61, both hemispheres 1586.5
2066 Male, age 76, right hemisphere 1260.4
2389 Female, age 91, both hemispheres 1047.8
2033 Male, age 80, both hemispheres 1030.6
2386 Female, age 85, both hemispheres 954.7
Spinal vestibular nucleus
nTPM: 1018.8
2186 Female, age 91, both hemispheres 1061.3
2384 Male, age 74, both hemispheres 1047.1
2780 Male, age 80, both hemispheres 1034.0
2806 Female, age 85, both hemispheres 1005.8
2796 Male, age 61, both hemispheres 1000.0
2748 Male, age 76, both hemispheres 964.4
Ventral medullary reticular nucleus
nTPM: 939.4
2060 Male, age 76, both hemispheres 954.1
2372 Male, age 61, both hemispheres 924.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1020.2
2741 Female, age 85, both hemispheres 1062.6
2302 Female, age 91, both hemispheres 1055.7
1986 Male, age 76, both hemispheres 1025.8
2180 Male, age 61, both hemispheres 1002.5
2118 Male, age 80, both hemispheres 954.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2550.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 2550.8
FF:10038-101F2 18-64 years, mixed 3571.7
FF:10174-103C3 60 years, female 2385.1
FF:10155-103A2 76 years, female 1695.6

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2147.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 2147.3
Samples: 4

Max nTPM: 2815.5
Min nTPM: 1855.7
Sample A Female 1855.7
Sample B Female 1865.9
Sample C Male 2815.5
Sample D Male 2051.9

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 21.1
77465048 Antisense, RP_070129_03_A07, Mouse strain C57BL/6J (56 days, male) 21.1

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