MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1108.8 nTPM
HPA:1108.8 nTPM
GTEx:1043.9 nTPM
FANTOM5:1441.6 Scaled Tags Per Million
Pig:1937.5 nTPM
Mouse:1349.5 nTPM
Allen mouse:24.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1108.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 926.1
1827 Male, age 72, unknown 1028.0
2666 Male, age 74, left hemisphere 1027.7
2411 Female, age 72, unknown 957.3
2586 Male, age 75, left hemisphere 948.1
2828 Female, age 72, unknown 936.7
2219 Male, age 76, both hemispheres 925.0
1870 Female, age 42, unknown 922.3
2019 Male, age 18, unknown 869.9
1833 Male, age 53, unknown 824.2
1830 Male, age 51, unknown 821.9
Dorsal raphe nucleus
nTPM: 931.2
2750 Male, age 76, both hemispheres 1007.5
2298 Female, age 72, unknown 997.3
2047 Male, age 72, unknown 952.5
1828 Male, age 53, unknown 923.6
2016 Female, age 72, unknown 774.9
Inferior colliculus
nTPM: 815.8
2097 Female, age 72, unknown 836.0
2849 Male, age 72, unknown 825.2
1848 Female, age 42, unknown 813.2
1890 Male, age 53, unknown 788.8
Median raphe nucleus
nTPM: 1108.8
2220 Male, age 76, midline 1108.8
Pedunculopontine tegmental nucleus
nTPM: 1028.9
2338 Male, age 61, both hemispheres 1107.5
2334 Male, age 80, both hemispheres 1018.7
1921 Female, age 85, both hemispheres 960.4
Periaquaductal grey, anterior
nTPM: 997.9
1947 Male, age 18, unknown 1045.3
1795 Male, age 51, unknown 1036.5
2502 Female, age 75, unknown 911.9
Periaquaductal grey, dorsal
nTPM: 851.0
1840 Male, age 53, unknown 878.9
2850 Male, age 76, both hemispheres 873.8
2464 Female, age 72, unknown 826.4
1831 Male, age 72, unknown 824.7
Periaquaductal grey, lateral
nTPM: 816.3
2053 Male, age 18, unknown 864.5
2140 Male, age 76, both hemispheres 830.4
2272 Male, age 74, both hemispheres 754.0
Pretectal area
nTPM: 951.8
1816 Male, age 51, unknown 1181.2
1944 Female, age 72, unknown 1081.3
2007 Male, age 72, unknown 1070.9
1817 Female, age 42, unknown 1005.9
2667 Female, age 75, unknown 968.1
1815 Male, age 53, unknown 962.3
2224 Female, age 72, unknown 907.5
2825 Male, age 18, unknown 900.2
2407 Male, age 75, both hemispheres 832.7
2316 Male, age 76, right hemisphere 789.3
2273 Male, age 74, both hemispheres 770.5
Red nucleus
nTPM: 873.1
2584 Male, age 75, left hemisphere 939.7
1821 Female, age 72, unknown 932.1
2588 Male, age 74, left hemisphere 923.9
2725 Female, age 75, unknown 911.6
2503 Female, age 72, unknown 883.0
1954 Female, age 42, unknown 858.5
2785 Male, age 18, unknown 857.7
2227 Male, age 72, unknown 852.1
2769 Male, age 72, unknown 843.6
1865 Male, age 51, unknown 835.7
1904 Male, age 53, unknown 832.5
2823 Male, age 76, right hemisphere 806.8
Substantia nigra
nTPM: 977.8
1916 Female, age 42, unknown 1140.2
1941 Male, age 53, unknown 1071.3
1851 Male, age 51, unknown 1011.6
1889 Female, age 72, unknown 993.7
2590 Female, age 75, unknown 974.8
2241 Male, age 72, unknown 971.9
2665 Male, age 74, both hemispheres 962.6
2583 Male, age 75, right hemisphere 914.8
2409 Female, age 72, unknown 876.5
2699 Male, age 18, unknown 860.2
Superior colliculus
nTPM: 888.8
1796 Male, age 53, unknown 1021.9
2261 Male, age 18, unknown 989.8
2087 Female, age 72, unknown 985.0
2664 Male, age 75, both hemispheres 879.6
2668 Female, age 75, unknown 875.1
2587 Male, age 74, left hemisphere 857.8
1913 Female, age 42, unknown 856.1
1839 Male, age 51, unknown 845.2
1895 Male, age 76, right hemisphere 819.7
1995 Male, age 72, unknown 757.6
Ventral tegmental area
nTPM: 980.2
2218 Male, age 76, both hemispheres 1072.8
1915 Female, age 42, unknown 1026.7
2410 Female, age 72, unknown 1021.7
2223 Female, age 72, unknown 956.7
1942 Male, age 51, unknown 912.9
2021 Male, age 53, unknown 890.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1043.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1043.9
Samples: 139

Max nTPM: 3081.1
Min nTPM: 267.8
Std nTPM: 438.3
Median nTPM: 979.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 3081.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2665.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 2129.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 2050.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1992.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1984.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1897.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1880.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1715.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1660.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1651.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1441.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1441.6
FF:10158-103A5 76 years, female 1441.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 1937.5
Pig sample Sample description nTPM
Midbrain
nTPM: 1937.5
Samples: 4

Max nTPM: 2723.1
Min nTPM: 1248.8
Sample A Female 2723.1
Sample B Female 1738.6
Sample C Male 2039.6
Sample D Male 1248.8
Periaqueductal gray
nTPM: 1497.4
Samples: 3

Max nTPM: 1943.9
Min nTPM: 1159.9
Sample B Female 1388.3
Sample C Male 1943.9
Sample D Male 1159.9
Substantia nigra
nTPM: 1852.6
Samples: 4

Max nTPM: 2547.4
Min nTPM: 1213.0
Sample A Female 2336.8
Sample B Female 1313.3
Sample C Male 2547.4
Sample D Male 1213.0
Superior colliculi
nTPM: 1509.7
Samples: 4

Max nTPM: 2108.1
Min nTPM: 917.7
Sample A Female 1672.8
Sample B Female 917.7
Sample C Male 2108.1
Sample D Male 1340.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1349.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 1349.5
Samples: 4

Max nTPM: 1384.2
Min nTPM: 1286.3
Sample A Male 1348.6
Sample B Male 1384.2
Sample C Female 1286.3
Sample D Female 1379.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.2
77465048 Antisense, RP_070129_03_A07, Mouse strain C57BL/6J (56 days, male) 24.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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