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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:721.3 nTPM
GTEx:1227.6 nTPM
FANTOM5:2427.7 Scaled Tags Per Million
Pig:704.3 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 721.3
Sample id Sample description nTPM
Putamen
nTPM: 721.3
2482 Female, age 94, left hemisphere 965.6
1838 Male, age 80, right hemisphere 773.7
1937 Female, age 91, right hemisphere 686.7
2489 Female, age 72, unknown 683.2
1829 Male, age 74, unknown 667.0
2647 Male, age 75, left hemisphere 638.4
2466 Female, age 79, unknown 634.5

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1227.6
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 1227.6
Samples: 205

Max nTPM: 3040.0
Min nTPM: 253.3
Std nTPM: 530.2
Median nTPM: 1237.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 3040.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 2839.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 2738.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 2564.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 2482.0
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 2394.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 2381.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 2338.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 2195.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 2171.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 2159.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 2129.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 2105.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 2047.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 2046.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 1992.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 1958.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1944.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 1912.3
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 1905.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 1887.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 1838.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 1822.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 1821.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 1803.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 1789.1
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1788.7
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 1758.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 1742.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 1740.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 1731.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 1719.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1697.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 1696.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1687.6
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 1685.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1679.9
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 1673.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1660.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 1656.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 1643.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 1616.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 1600.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 1599.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 1595.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 1594.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 1591.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 1588.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 1586.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 1578.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 1553.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 1541.1
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 1533.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 1522.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 1521.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 1520.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 1512.5
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 1508.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1507.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 1506.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 1490.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 1484.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 1464.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 1458.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 1458.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 1452.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 1451.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 1444.8
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 1443.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 1432.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 1422.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 1418.4
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 1413.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 1401.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1399.4
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 1395.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1389.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 1378.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1376.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 1364.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1362.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 1349.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 1349.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 1346.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 1331.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 1325.5
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1321.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 1317.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1315.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 1308.1
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 1298.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 1284.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 1284.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 1281.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 1280.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 1278.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 1276.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 1263.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1259.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 1252.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 1250.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1247.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 1237.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 1232.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 1206.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1201.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1173.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 1162.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 1150.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 1149.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1146.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1145.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 1131.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1125.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 1117.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 1112.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1109.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 1108.4
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1106.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1093.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1091.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1088.2
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 1084.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1067.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1066.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1063.3
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1053.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 1041.2
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 1040.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 1022.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 1010.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 997.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 995.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 994.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 980.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 978.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 970.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 960.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 949.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 942.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 929.4
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 926.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 908.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 896.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 893.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 886.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 875.9
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 874.6
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 852.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 837.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 835.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 829.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 821.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 816.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 809.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 807.7
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 805.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 777.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 763.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 752.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 744.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 738.1
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 737.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 731.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 720.5
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 704.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 703.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 700.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 688.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 680.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 678.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 674.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 669.2
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 668.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 661.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 656.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 651.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 649.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 641.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 620.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 619.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 616.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 607.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 607.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 600.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 597.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 597.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 595.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 590.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 579.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 573.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 559.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 424.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 403.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 379.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 376.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 341.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 308.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 305.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 304.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 302.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 295.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 270.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 253.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 253.3
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2427.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 2427.7
FF:10176-103C5 60 years, female 2427.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 704.3
Pig sample Sample description nTPM
Putamen
nTPM: 704.3
Samples: 4

Max nTPM: 855.8
Min nTPM: 583.9
Sample A Female 855.8
Sample B Female 583.9
Sample C Male 733.7
Sample D Male 643.9

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